Scaffold Ga0209359_10019469

Overview

Basic Information

• Taxon OID: 3300027830
• Scaffold ID: Ga0209359_10019469
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2352
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -38.0018
  • Long. (^o): -44.9985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005670	Metagenome / Metatranscriptome	393	Y
F018197	Metagenome	236	Y
F068937	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209359_100194693	F005670	N/A	MPLLSRQEYNLILRSFDKYDVYMNTKERELREQLEEKLYNNFYNPKDKVAQTDINLPALYDIHTEKDTSEDNVIRSLNFTS
Ga0209359_100194694	F018197	N/A	MNTDLPKETNIKEWTNMPPISEELYQELVREFNNERLYFFNDSYTLED
Ga0209359_100194695	F068937	GAGG	MNKSATEYDLNNEQFEQLIDKYITTVVDSMSMEDFQQYVRNDMWDYLGKCSFSGVLNEIKYTLDDEMLEEFVTTIKEESKD