Scaffold Ga0209359_10000541

Overview

Basic Information

• Taxon OID: 3300027830
• Scaffold ID: Ga0209359_10000541
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9564
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (86.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -38.0018
  • Long. (^o): -44.9985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013776	Metagenome / Metatranscriptome	268	Y
F015653	Metagenome / Metatranscriptome	253	Y
F047728	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209359_1000054114	F047728	AGGAG	MKQITFSDKQFYDLLQFTSEYVDNIIDKSVEYDDDLIIEENEEIIDIHDFLCECKHKRLTMSPNEHIGNWSLEQMEEFNNDTN
Ga0209359_1000054124	F015653	GGAG	MIKKFKSPIDECEFLYQIVDGQLSYRIEGTNWQDFILEDKRAYNDEVYAEFVSLLEGN
Ga0209359_1000054127	F013776	GGAGG	MKEFSFTVTKTGYINVEADSIEDAETKLQENFGHFYVITDTGEELSNGWETTGEVEEELECAFNDYEEESA