Scaffold Ga0209773_10167471

Overview

Basic Information

• Taxon OID: 3300027829
• Scaffold ID: Ga0209773_10167471
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 917
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017340	Metagenome / Metatranscriptome	241	Y
F029817	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209773_101674711	F029817	N/A	FTGNANIAAPLPLLMGKSAIATLYYKLNTWASFAFEQSVYATRLEDHLTLYTIAGQPSNEWQDHRTEFGPIFTF
Ga0209773_101674712	F017340	GGAGG	MSIGRLAAVQMGLLLAAMFANAASQKDAVRITVLDSVTRASTADNNNGVPLNCEQLTFDAYCRSTTNVPLISTLLVREDNEPPFWISCRIESRYSRCIPLPKGESFDARREKRGITVYYVDDKGKARKQLYTL