Scaffold Ga0209035_10060824

Overview

Basic Information

• Taxon OID: 3300027827
• Scaffold ID: Ga0209035_10060824
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1835
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9831
  • Long. (^o): -44.9892
  • Depth (m): 754

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047304	Metagenome / Metatranscriptome	150	Y
F076483	Metagenome	118	Y
F084713	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209035_100608241	F047304	GAGG	MSEIKPQYYGAVITKSVATEKQIQKAKKDGNFVKCPTRKAKGSKNARWGQCE
Ga0209035_100608244	F076483	GGAG	MISSNILGQIFKEHNIEVDRISKIRTLQTLLNDTTLDIPLMRRVLTTPNAHWILRNVLVNNSEHVNVNRIIKLIKEVI
Ga0209035_100608245	F084713	N/A	MKKIIIEKKYDKDYRKTMYKVVKLINSDRLHLLNMQYDEPSMLRYIKALPATYSYEVNNKMGV