Scaffold Ga0209060_10000751

Overview

Basic Information

• Taxon OID: 3300027826
• Scaffold ID: Ga0209060_10000751
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47444
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (77.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000585	Metagenome / Metatranscriptome	1007	Y
F001949	Metagenome / Metatranscriptome	613	Y
F002584	Metagenome / Metatranscriptome	546	Y
F007872	Metagenome / Metatranscriptome	343	Y
F020595	Metagenome / Metatranscriptome	223	N
F052792	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_100007513	F000585	GAG	MNHLAKPRKAEADLGRQSQQLAKDECGLVAPDRLAQTITEFVEWRAFSYWLRLTVETQGFVSDPMIAILRERCPGFLDYASAFAKEHPREPEFLWLRFLEWTDERLFHVSIAEGWRHALGYYATRDPRMDQIRAHWKQCRREWKLQPPASLPSFEAWRESALQRR
Ga0209060_1000075133	F052792	GAG	VDVTADSLFEAAAVAVRAFREGALVEELPVPGTELRITVSPLPVEHRVRLQRVEQWAQTGTVKSPVEMLRRERVRELLGLKNEAVGRAGPR
Ga0209060_1000075142	F007872	AGGGGG	VACCRGPSSATWPQSIRSTLPTEMAMPNRDLIRASEIADWCFCRRSWYLSARGVGPSLVQIEKRHAGVDYHQQHARSVNQARGVMNGATRALLVAVLLAAVYWFWAYSR
Ga0209060_1000075146	F001949	GGAG	VSYFNLEFNPQMATSLVHCLNRRYKGAQKFPVTAPDAQGTLIVWARDPQECREHLMNALFDLIFARNRVGAAVTNPPCIFCGGKTQSRGRNSSGTRAWRCMNPDCQRSFVIDRTFRGGINHPTQSKKPAFYQLVFVDGKTIREACDALGISMSAGDNWYQKMLAVRKRIDHKCPCGKELRHRGACRFRQGYETAKGNAHESLPRTSVPKAQGVRATSKI
Ga0209060_1000075147	F020595	GGAGG	MACPDCDSPAGDLRFATSVETHGLDCGPYETFNEEFIVCRECGGRYDVREWDGTQEVREIRIPSDGIETTAVRLNQLAAG
Ga0209060_100007516	F002584	N/A	MPVKPPPSLGPDSCGKLSDGFLHVSGHAKETVRRVRAYLRGRSSPDPKSLANETKALTPAQWSVALPEQRRNGKVVYLDRASLERIADARPDPLETVYRQELVSLLEARLPPEQVPYLDAFLADDEPKDIAPRLGISPKAASARMRRFQAKLAKIYAGLTPRIKASH