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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027826 Open in IMG/M |
| Scaffold ID | Ga0209060_10000133 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 192361 |
| Total Scaffold Genes | 169 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 102 (60.36%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002461 | Metagenome / Metatranscriptome | 557 | Y |
| F006237 | Metagenome / Metatranscriptome | 378 | Y |
| F027934 | Metagenome / Metatranscriptome | 193 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209060_10000133147 | F002461 | GGTGG | LLLLGVFLAGGVQFIHAQDDGAVPLGDVARSLRKKPAAPDPVIDNDNLTQAIETVESRRAAGTSPVFTLDPGGKSFHVSSPDVTCSLSFSAKSTALLADPVMLDELPRSELAKLDGPATIDGDSLQVSMHNGTAWELREVLIGLTILRAGARDSATAYGPRIVPAMAGTQSPDTAQKQPDVTLLLRVKGSAAPSATATFRAALNFALFPDQEWHWAVVRAKGIAPQEAPLLPTIDPAPGALSHGPENGAPVQAPLATPLPTPR |
| Ga0209060_1000013353 | F006237 | N/A | MARRPEVAPDGSTREEILSREHLDELARNLSHLSLPAIVDFYQHAYRACRIINERTFPPARAVQELVQAWKQLRKWRRK |
| Ga0209060_1000013371 | F027934 | N/A | MGKQTRFHMLPEDCRRFVLFLQERDPVIVTEWHSSELAEIQEVNRPWERGGHYCLWNQAILPGLTRKPTGKYFNIDFSAPVIQFNYESPMLESWNGQPALTQGRIWASFETENKGFEKWYNAVVRWIRKNFIRDLAVGHDRDSIGPAAYEWFRSGGLLLPNFRPPLTEDWLAWASVQNQHRTDLMRSQARLERLRDA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |