Scaffold Ga0209060_10000041

Overview

Basic Information

• Taxon OID: 3300027826
• Scaffold ID: Ga0209060_10000041
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 382831
• Total Scaffold Genes: 307
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 189 (61.56%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F002201	Metagenome / Metatranscriptome	584	Y
F009971	Metagenome / Metatranscriptome	310	Y
F023224	Metagenome / Metatranscriptome	211	Y
F024621	Metagenome / Metatranscriptome	205	Y
F032558	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_10000041117	F000323	AGGAG	MKTICVLLLISGSFLFAQDSTKDSKGQVTVQGCVGRQNGDYVLTKQHPAITYELQATGKTRLKNYLGQRVEVTGNEGPTMSSSSDALNKTGSAAPTTITIRSIKTVAKDCETMSGQ
Ga0209060_10000041118	F000269	GGAG	MRTLSRLAPLLAIFLLPSLLVASDQSTSRPTDVPATVIAHLNLPQATGAQMLLQQESSKRYLYVQQAGKTGFMIVDVSRPEKPTLVKRSAESNQATSGNLEMVAPNVAIAEAPEKTASTLTNSNHPTETVRVLDLSDPRNPKTLETFNKVTSMLPDGNHGLIYLTNDEGLWILRYNRPSLLEPAKKKPPCDSNSEIMAMPPDCD
Ga0209060_10000041210	F032558	GAG	MSDEKTSRTNLSQMDKKPVARALSGVQCLRCKHEIETYVFTKLTFLPYGSQGGNVMLECPKCGHLEFLSQNSPLLQRLKANPVAVGDGD
Ga0209060_10000041221	F002201	GGAG	MWIHDVAPERLAELFHHYLHALLPDLEGKAAAPKRGDWTAVPAKEKSRLVAAARLALLELESGTSEQGESRRYFARPGEAEWGC
Ga0209060_10000041273	F009971	AGGAG	MRRFILGLLLLTVPMVSALAQTPALQMNVVYVCTDGQSFKVFSCSSATGACDYQNYKNGKAYQRGEALRVQLAALLPSKCHAQTPAEAQKDPHTGEIAPAPSPFKARAATASTGAASATPTNAPSGPGPGGFKVGDTVRVLIDGWQEAKIIEVHGNSYLVHLPNGINVSKMWPWEVHRLGKLTAEDHAAGQYDLHDRVQVLVNGKWMEGEIRGQNNVNMYDIKVPGVDTGFGSDIVNTTANNIRMSTTAAPAPAQRAAGQVPKAGLASCAGRYEGRWEHVSGMGGMTVIFRSGKATIREGLGGDMLFDCFTGEGKVVFYKAGSFTPFSYDFDVNSDGTLQTPLGAIKKMGN
Ga0209060_10000041295	F024621	GGA	MARSEHRSEQQIQAGRTPLGLWWSLIAGFAAWAFDLGCSYVLEQHSCSTGHYYVLHITSVVCFVIALTGFGTGWMEFKRFPGTTSEEGGSHFDRAHFQALLGMALCLSFAVVIIAGAVPRWILSPCE
Ga0209060_1000004159	F023224	N/A	MTRSQPGKRRSTRMALNASVGLTGQDRQKCAFTMPARATNLNRHGAAVQLARELAVGSVLVVKNQRGAEVSARVVAQVAARQGVPTYAIEFVEHDKGKDFWGISFPATNT