Scaffold Ga0209060_10000029

Overview

Basic Information

• Taxon OID: 3300027826
• Scaffold ID: Ga0209060_10000029
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 452536
• Total Scaffold Genes: 439
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 346 (78.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F000885	Metagenome / Metatranscriptome	849	Y
F002750	Metagenome / Metatranscriptome	533	Y
F002853	Metagenome / Metatranscriptome	526	Y
F007488	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_10000029199	F000188	GGAGG	MSVKPEMVFDVCWEVYRGAREVLETKRSISALKPEKAGKFLWRPDVKARLNEWVADFALAGQAALDEPGRASRMVMFRMYYLGLAPYDTARHFLGLSEMNWVNWSEEIRRRCGAEMLRRGMFPPRKYFGA
Ga0209060_10000029209	F000885	GGAGG	MSNPKLVFAGEIAQIAGVISAVAGVVLSLHHWPAAAALLGGGAAFYIGKKLRAQ
Ga0209060_10000029211	F002750	GGA	MEFLKRLLQSKYVGLLEGEVTRLRAENRALTNSLLGTAGFPPVDFPEAPKPQELPRTRRRSWHQIRAWREKEAARQSDAETVASDRS
Ga0209060_10000029215	F000512	N/A	MTNGGLSAFVLQLRTMTHCIQVVRETHETPENVAHRLELAGGCNRFGGPNYRAVWGWNRLAWIGGKFEDRDEHGSLIRERIELRREPKYPAVNRWHIERWVPPETYGSPRAWYAQTNEIANGRCVAALGPYPSGGEYEHCFTLETPKGEFIQLTPTVAEYIATAIERSRSKPRARSREKLFDREAREERAYENWAFDLLDDATPAFHKLPFVTVS
Ga0209060_10000029216	F000739	N/A	MNIARIELWLKGMLAAAISGAAGGVLTGFAAVGIDPTHFNLQAGIGATFRIGVAAALINSVIGVAAYLQKSPLPEA
Ga0209060_10000029223	F000781	GGA	MLTVAQLVPLKNRDPYLYETLVKIVAAVNATSRRAGVDPSTPSPAPDPIASLTVRASNGWFDISITDPSNSRPGLFYFAESDITPGFNSPRVYFMGSSRNLYVQLGNQSLYWRAYSQYIGSLPSAPVTFGTPALPVSGGGITGPSPLPSQGSGALANGNAPGGNGFGIHPGSRITRNSAF
Ga0209060_10000029224	F007488	N/A	MVLGFIRARALREILRFEIEMQIREYKPDDLDALKRIHEKQNFPYPFPDLQNPLFLTKIVLTDGEVNVAPGFTKVSSDRVLGAALLRLTAEAYLLLDPKAGTPKARWQSLLLLHEAARRNAWHRGLEDVHAWLPPAIARKFGRRITQLGWQRDDAWTPYCLRFGKQHDQI
Ga0209060_10000029225	F002853	GAGG	MGRGAQDQTRQLTDQQLASINALNQQFLGQQQQVGSLLLPQYQSILKNPGLSPADKAAVTNDSQGAIGSAFDSLQQSAANRAARTRNSAGFADLEDDLARQKGIAEGNQAQQNQLAFANTAFQRQLAALQGLSGLYGVDSNLLARGLGIPAELLNVRANSSRPSGFFSSLGSTLGGTLGALPEALL