Scaffold Ga0209060_10000025

Overview

Basic Information

• Taxon OID: 3300027826
• Scaffold ID: Ga0209060_10000025
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 511435
• Total Scaffold Genes: 436
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 340 (77.98%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000655	Metagenome / Metatranscriptome	958	Y
F000771	Metagenome / Metatranscriptome	897	Y
F001520	Metagenome / Metatranscriptome	679	Y
F003445	Metagenome / Metatranscriptome	486	Y
F005420	Metagenome / Metatranscriptome	401	Y
F014777	Metagenome / Metatranscriptome	260	Y
F050313	Metagenome / Metatranscriptome	145	Y
F087516	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_1000002512	F050313	AGG	LDAIPNGFKVAPVNRTLTHAALLLLVSPVMVCQTQGHAPDCSTLKYSRHKVSCLCGTVQVCSGDICGPPSVYELDDDIAVELRAKNGTILDTQKLVVETREMQGATQDGTKTSYKQTERRFCFEGKQDGDYVLAFVLHKKGIPQPAVIFPTNYAHKRRKSCDSIYMVEPLCPR
Ga0209060_10000025159	F000655	N/A	MIWWFLILGVSTLVVVCVAIALFVHLRRHLHKAHDGTTDMERQTNQLKS
Ga0209060_10000025161	F003445	GGAGG	MAFPENEPTIQRGDPTIQLIDLLVARLEECLGEVLPLETDDLLKDYAQNARNSTASAIEQLRLARARKEQQLGGRTK
Ga0209060_10000025186	F000771	GAGG	MKKVLSVSALALSFVAGAALSAQVRDWHDLDGVHKHVNEAIREMERARAANHYDMDGHGVKAEEHLRAAERELDMAVQAARR
Ga0209060_1000002519	F087516	AGGAG	LTFCLANATGQAKVLTNDPLTGLPLIPATVLFKNVGNEPDKLSDVQVCKSKGQGNFYSLSNIMNPASGLKMDAAAAWYASHLSGFKKVQGYESGRSQIAFYNSDKTIVILLTGQLGAEGENANAYGVSYERFQPGISEKAIGPNTGQVHLQLIGAERC
Ga0209060_1000002523	F014777	AGG	MSAGNKTLIQILAASFALCVTASAQCPLNTLIVKGHVVENANAHSKVRVQLVYPKEKPGEAGEATVEDGSFQIPIEFVTMQSSIFTNLPKRCGRKPKTVVITLLENDQQSDQVFLDFLKNFKMTDPSAYALRSEVVLNGPH
Ga0209060_10000025296	F001520	AGGAG	VNAIKFLVAAYIATWAIHFFYMGTLVTRFRRLQKQRKELGKE
Ga0209060_1000002596	F005420	N/A	MRCGIGLALGIVLLVPALRAQAPEPTIYVESFRKGATHIAEDKFEAHLSPADANYRERIKDAAGNDRYELTISPQGPAGDNKITSWRVQLRDLRHNLYSNLLVADQQPSEDAKDNLWWLNPNPFGPVPLHARRIVKVDGFYVIFHVKDIHFTPLDSPYVDSLVVNFEVTNTAPKISH