Scaffold Ga0209060_10000019

Overview

Basic Information

• Taxon OID: 3300027826
• Scaffold ID: Ga0209060_10000019
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 551180
• Total Scaffold Genes: 471
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 297 (63.06%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F000279	Metagenome / Metatranscriptome	1383	Y
F000426	Metagenome / Metatranscriptome	1154	Y
F000508	Metagenome / Metatranscriptome	1069	Y
F001709	Metagenome / Metatranscriptome	648	Y
F003117	Metagenome / Metatranscriptome	506	Y
F003398	Metagenome / Metatranscriptome	489	Y
F004328	Metagenome / Metatranscriptome	443	Y
F006428	Metagenome / Metatranscriptome	373	Y
F008825	Metagenome / Metatranscriptome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_10000019128	F004328	AGGAG	VPDQPSTPSTAPASPSTQGPTIHIGDEFGTAKRNLPPVKILIYAIAGVLIIVGIVSFLQRAKPQGGGSLDNIAAVDLPGQNSTLVALTFTLRNSGQKSLWVHNVEAKVVTAAGEQSSDAVSAVDFDRYYQAFPSLKANTQPALSPEDKLQPGQQVMRTVLASFPVNLDAFNQRKSVSVVVQPYDQPVPIVLTK
Ga0209060_10000019148	F003117	N/A	MPDRKMIIVRFIGATPSTAYCDVCRLAFRTRRELLTDADKAKQQLQDDFEKHECRPEESAVNEALTQIR
Ga0209060_10000019284	F006428	GGAGG	MKRILWATLSVVMLFAALPAFAQNPNYDVGPVWRVVYYSIKPGQGEAFWKDFRENLKPTYEALKKEGILSEYKVWTNVTVDHPNDWDVALGLMFPNWAAMDQGDAKASTIIAKHYGSREAMLEAGKKRNELREVVASKLAHEVMPK
Ga0209060_10000019304	F000279	GAG	MSHKAEPAATEEIILPENLLPLGSVLSEGVTALDVSMVLAKVFRVQHAEVALLRLDAGLLKFIFPEHLRTTGAIPISSKAIAAHTALSKKAEIFNNFARVKHASIFETIKPVGVEPEVSSSLAPIQKLMSVPILDSNSSVMGVIQISRKGLDARLTQDFSREDLHDLELAAGVLAASPIMHES
Ga0209060_1000001935	F008825	AGTAGG	MDCVQLQQSLAEVEDGSSREQQAHLRACPACSALVRELQMIIFAAGELQEADEPSPRVWNTIEATLRQEGLIRPSRSVHFLPSFVERWGAARWLVPAAAMVLIAVGIVVHRQANPAPVAQQAAVILPANNLGGLNDDDLLQEVAANSPALRGQYEENLRRVNESIRDAQVLVDESPNDSDARRSLMDAYHQKSMLFEMAMDRPLP
Ga0209060_10000019351	F000426	AGGGGG	MKDIHEVLRQKQTKYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNSVLMEGDEGSIAGDSMSAKAAVGAAASSASKATRPTAPRWP
Ga0209060_10000019374	F003398	AGAAG	MTTSHTHTLSILEVCAQVKHLGYAASERVRLYGEEYEVVSDPYPEADGIAVQVTTRNDKHVRPLQLPATLIQSVKGRRAA
Ga0209060_10000019377	F000508	AGGGGG	MMNQVVASLQKEYSRLQSEIERVGKALDALGHSGGKKKFRATRVLSKEARERIAEAQRIRWAKVRKAAAK
Ga0209060_1000001992	F001709	AGCAG	MPQEISVSYQAIKSKVYRLIDSLVVGEKNEVEVQESIRRWWELIHPADRPIAQKYLLLVLERSNLALEAVEAGLAEATSPDMVPTHDSSKALKLVDRMVKQTTKHTGLGTPA
Ga0209060_1000001993	F000249	GGAGG	MRNLLWILAFSIFFPAVGWTQNPGTAPAVQSSQDRFFLPRDTFWGWAQLDLAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMISGTLEVRPFGRGQLRRLMIFGSPTFLFGKTIPHTLYTWSPDAIGIEHSWGAGILIAKGFEFRMTQHFLFDRLGARDTYLGLADLGNNGPWGRYFTLGVRKSFGTRRW