NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000016

Scaffold Ga0209060_10000016


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000016 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)625633
Total Scaffold Genes521 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)406 (77.93%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F000228Metagenome / Metatranscriptome1519Y
F000260Metagenome / Metatranscriptome1431Y
F000969Metagenome / Metatranscriptome818Y
F007331Metagenome / Metatranscriptome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_10000016142F000228AGGAMFLVPCSCGTTFAVAENHDHQGTAWSRYMTCPGCGKRHDPKNRLLQIGFHREGYWKVDNC
Ga0209060_10000016161F000036AGGMAYKETFWMACDSTEQLRAEYGPFLTRGEAESEAKKLGFGYLLRYEHILGANEEIEEVRCVFIELPGAAPAGGETLPVTLHTRCASCGESAAHETGWQAEVWADIHEFEHSRHRVRLFEHARGKGLKEIGDWRA
Ga0209060_10000016230F000260GAGGMNWKSRLLVGVLTAVAMMLGTYLLPRGGTLRDVALAQFPATVGIWAIFVLLFVKLK
Ga0209060_10000016360F007331GGAGGMSTIEEVRAAEKKVQQILDELRHAGALDPNHLNDQLRAATEEYAQVVRELKA
Ga0209060_1000001661F000969GAGGMINDNVVKCPLCGGFTHVENSELLAALKEPRIREQVEKYIAELLKSPVDELTTVGATQGGRDFQKDVHSWNPCVPMWKRSPKE
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