NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000008

Scaffold Ga0209060_10000008


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000008 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1467461
Total Scaffold Genes1349 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1028 (76.20%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053166Metagenome141Y
F062118Metagenome131Y
F071061Metagenome / Metatranscriptome122Y
F072053Metagenome121Y
F072796Metagenome121Y
F074640Metagenome119Y
F075253Metagenome / Metatranscriptome119Y
F080540Metagenome / Metatranscriptome115N
F083175Metagenome / Metatranscriptome113Y
F092803Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_100000081219F080540GGAGGLADATEERLQFAWKNFEDQQAIIRAADLKAGYLVTFLLFFGASTIPLGREVFPKLRLDAVRGPASLIYAVSYVLSVIGFVWSMYLISHVMTPRAKKHSSEPKPGADLLFFGHITKFESSDKYFEAVSRVEPEQILRNVTDQIFELAQIAKAKLDSLKAFSRSFKLTLVAWFISTAVGFWIMSWK
Ga0209060_100000081242F074640GGAGVVANGKLGLRIGLGLAAILAIFVGAPASKAQTAGIAGKYQCTQVKVHGKVKSCSSSQLNLKADGHFELRGWEGDYSIAGSYVELSDKSVKSKAKLEPGYKLIFKYQGKDGVVEVTYERRQSAPANEALS
Ga0209060_100000081288F092803N/AMQGNPALPQGIEGVVMGKVYYNRMRKAAFALACAALVGMLTVAMPQQLPQSTPIRASVLDSHEGMTIGAEPLTTLEQYKPAFPKKNPFASGVIAIRVMFRNETSESIRVNISRIRLSLRLEDESRQDLPTLTSDDVADAVFASKAKDPSKRTRLPFPLPSSGPKVGHDKNWMELQKQAEEAGFRTGVIPPHSSAQGLLYFDLQGQLDLLSNARLYIPELVALEKNQGLLFFDIDLSRATS
Ga0209060_10000008146F083175N/AMRRRWVHLTVVLFVFFAGCESHPLTDFRPAVAAGVFSGTIEDLKKLNVTDAEIAEVIQLKQAGISEDTILALVRTAHDHHHPFTATGAVTSLANANFSEARILQIAQTDKIDSIGGDAVMLHVIGLSDPTVQMLLDRRLKNIPTMSVGTIADLKNTGLTERDILYRINGGMTDAQGEAEANARQKAMARSNTGFKKITGRVRK
Ga0209060_10000008212F072796N/AMPGSTPFAPPNANELATKLTQSLVQERIVQRFVDSYVVENSRHALQVHAPLYRDLLTLLQREALLAATVALIARVNAGPATAKKPAPLTRKDAALFRRKFLLALTREKKWNAGAALDFQSDLQIYEDVLSKNSAAKRSRKPFELAHHPFVDRCAFVLDSSFMEKARVAATRALVEIEDLAAHIVERSQGNSTAANDVKKH
Ga0209060_1000000852F062118GGAGMTFAQHLPGYKTYDALKDSAFRLGVYIGLCLFVVFGVWLIVANKFPMFERFALERNLFAAAAMAAFAVIPVLRFRRKPVSLLESGLIAWAVFSFLYRLSCLYFTGLPLWHSALQVFMAGALLYLIAATLTWIVGLVLRVRASHSAPRQNHQLT
Ga0209060_10000008535F071061GGAGGVRDDLRCVCHICQVEDHLFDVLAEPPGNNRFLALAASSPVLAKFTNISELLAYLHSPRTGDYDWSDAGATLTALLGARAVAAESELIHSVLVLAFAPTIHRTYTEVCAWFRELEPADIGQQILAFFLELVASAATENLAGILPIALSRSLRKASFRWAEKEQRALLRRQDEALGTDGSERASEPAFERISVLNDFLDHCTRQGLLSRFERQILLKFKVDGFTGKEIQDRHTVLSESAVYLRVHRIMQRLQDAALALSSKNGDSNRGGDVLACQAYRKKSGPAMKDFSLKDSADFLPISKSRGQLSLDSPLASGEGQ
Ga0209060_10000008550F053166AGGAGGVSFIKKPAAMVTREFRLEEPLAEMLDRYAEFIGSTPDHVVASALRFVFWKDKEFDRLQREEKKARKTAQTVDVKKA
Ga0209060_10000008566F075253GAGVLDLLPSLGHLPPRLAAFLMMALLVAAAIPLALAWVSLLPPEREPFSRPDLPRPRAPRCDRFATFLLTNVSLSIFAAIPRIADTLHLDSFPPLFSRSWILHIEMVLSIWLVFVPALAAAYSAVRSNPIRKHLIVGGILVLILWFLSPTLLNSLATRP
Ga0209060_10000008990F072053N/AMNFFRRHIAATVFAVALLPVASAQSTAPPKAKGQWKPVPFAIVHYNEDAPKSWNLYFSSKKGVLLLRLWKRYLLIDRNAQQVFDVDPEKIVTKGEEIEYSPEDNPSNPVDITDWRERDIGTLHRLRFRFGEKGSYLDIQTPLKPNGTPLY

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