Scaffold Ga0209060_10000008

Overview

Basic Information

• Taxon OID: 3300027826
• Scaffold ID: Ga0209060_10000008
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1467461
• Total Scaffold Genes: 1349
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1028 (76.20%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053166	Metagenome	141	Y
F062118	Metagenome	131	Y
F071061	Metagenome / Metatranscriptome	122	Y
F072053	Metagenome	121	Y
F072796	Metagenome	121	Y
F074640	Metagenome	119	Y
F075253	Metagenome / Metatranscriptome	119	Y
F080540	Metagenome / Metatranscriptome	115	N
F083175	Metagenome / Metatranscriptome	113	Y
F092803	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_100000081219	F080540	GGAGG	LADATEERLQFAWKNFEDQQAIIRAADLKAGYLVTFLLFFGASTIPLGREVFPKLRLDAVRGPASLIYAVSYVLSVIGFVWSMYLISHVMTPRAKKHSSEPKPGADLLFFGHITKFESSDKYFEAVSRVEPEQILRNVTDQIFELAQIAKAKLDSLKAFSRSFKLTLVAWFISTAVGFWIMSWK
Ga0209060_100000081242	F074640	GGAG	VVANGKLGLRIGLGLAAILAIFVGAPASKAQTAGIAGKYQCTQVKVHGKVKSCSSSQLNLKADGHFELRGWEGDYSIAGSYVELSDKSVKSKAKLEPGYKLIFKYQGKDGVVEVTYERRQSAPANEALS
Ga0209060_100000081288	F092803	N/A	MQGNPALPQGIEGVVMGKVYYNRMRKAAFALACAALVGMLTVAMPQQLPQSTPIRASVLDSHEGMTIGAEPLTTLEQYKPAFPKKNPFASGVIAIRVMFRNETSESIRVNISRIRLSLRLEDESRQDLPTLTSDDVADAVFASKAKDPSKRTRLPFPLPSSGPKVGHDKNWMELQKQAEEAGFRTGVIPPHSSAQGLLYFDLQGQLDLLSNARLYIPELVALEKNQGLLFFDIDLSRATS
Ga0209060_10000008146	F083175	N/A	MRRRWVHLTVVLFVFFAGCESHPLTDFRPAVAAGVFSGTIEDLKKLNVTDAEIAEVIQLKQAGISEDTILALVRTAHDHHHPFTATGAVTSLANANFSEARILQIAQTDKIDSIGGDAVMLHVIGLSDPTVQMLLDRRLKNIPTMSVGTIADLKNTGLTERDILYRINGGMTDAQGEAEANARQKAMARSNTGFKKITGRVRK
Ga0209060_10000008212	F072796	N/A	MPGSTPFAPPNANELATKLTQSLVQERIVQRFVDSYVVENSRHALQVHAPLYRDLLTLLQREALLAATVALIARVNAGPATAKKPAPLTRKDAALFRRKFLLALTREKKWNAGAALDFQSDLQIYEDVLSKNSAAKRSRKPFELAHHPFVDRCAFVLDSSFMEKARVAATRALVEIEDLAAHIVERSQGNSTAANDVKKH
Ga0209060_1000000852	F062118	GGAG	MTFAQHLPGYKTYDALKDSAFRLGVYIGLCLFVVFGVWLIVANKFPMFERFALERNLFAAAAMAAFAVIPVLRFRRKPVSLLESGLIAWAVFSFLYRLSCLYFTGLPLWHSALQVFMAGALLYLIAATLTWIVGLVLRVRASHSAPRQNHQLT
Ga0209060_10000008535	F071061	GGAGG	VRDDLRCVCHICQVEDHLFDVLAEPPGNNRFLALAASSPVLAKFTNISELLAYLHSPRTGDYDWSDAGATLTALLGARAVAAESELIHSVLVLAFAPTIHRTYTEVCAWFRELEPADIGQQILAFFLELVASAATENLAGILPIALSRSLRKASFRWAEKEQRALLRRQDEALGTDGSERASEPAFERISVLNDFLDHCTRQGLLSRFERQILLKFKVDGFTGKEIQDRHTVLSESAVYLRVHRIMQRLQDAALALSSKNGDSNRGGDVLACQAYRKKSGPAMKDFSLKDSADFLPISKSRGQLSLDSPLASGEGQ
Ga0209060_10000008550	F053166	AGGAGG	VSFIKKPAAMVTREFRLEEPLAEMLDRYAEFIGSTPDHVVASALRFVFWKDKEFDRLQREEKKARKTAQTVDVKKA
Ga0209060_10000008566	F075253	GAG	VLDLLPSLGHLPPRLAAFLMMALLVAAAIPLALAWVSLLPPEREPFSRPDLPRPRAPRCDRFATFLLTNVSLSIFAAIPRIADTLHLDSFPPLFSRSWILHIEMVLSIWLVFVPALAAAYSAVRSNPIRKHLIVGGILVLILWFLSPTLLNSLATRP
Ga0209060_10000008990	F072053	N/A	MNFFRRHIAATVFAVALLPVASAQSTAPPKAKGQWKPVPFAIVHYNEDAPKSWNLYFSSKKGVLLLRLWKRYLLIDRNAQQVFDVDPEKIVTKGEEIEYSPEDNPSNPVDITDWRERDIGTLHRLRFRFGEKGSYLDIQTPLKPNGTPLY