Scaffold Ga0209060_10000007

Overview

Basic Information

• Taxon OID: 3300027826
• Scaffold ID: Ga0209060_10000007
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1505266
• Total Scaffold Genes: 1324
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1033 (78.02%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000043	Metagenome / Metatranscriptome	3655	Y
F003856	Metagenome / Metatranscriptome	465	Y
F004377	Metagenome / Metatranscriptome	441	Y
F007286	Metagenome / Metatranscriptome	354	Y
F016555	Metagenome / Metatranscriptome	246	Y
F041364	Metagenome / Metatranscriptome	160	Y
F053506	Metagenome / Metatranscriptome	141	Y
F075228	Metagenome	119	Y
F088587	Metagenome	109	Y
F101777	Metagenome	102	Y
F103195	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_100000071150	F003856	GGAGG	MSRRTTAIVLVAALMGFIAGYALRSAPPDPRNNVSLVPSAQAQEKKAEVMPFGFNDPREPALAPDAPPVTFWSADDLYKAHADLAAKAAKAVKEAGSGSSQSFGGGPVHVSTRNFSIFQLYRAHRDQPVQSLTKVNSLWDDAEQHAGAYDFYVITGGTGEMIVGGKIANQQNLHDKDGVIPGEYRGQPIVGGQSFKVKAGDCLLIPPDTPHQPKPDAGGFSYVIMKINVGVYPWALVR
Ga0209060_10000007136	F041364	AGGAG	MKKRVFFCTLLMLMACFVTAAQQQNQPLTFWYEYHVNPGKEEDFMNLVKTVGQPVRDKLMAEGVVLAWGVESPLLRIPDAATHLIWFSVNDYTALEKVDAAMRAQIAKMTEDAAKGSSGKKGATPNGGPMEQMRSITDFAKTHDYLTRDLVSGFAPTMAPAGTLPWTRYAFVRVKPGKGAEYRKAWEKYNKPIFDKLAADGTLLAFGLAVEDVRTDGDFTHYTWLATKDLASQDKVRAAFLADRDKRSAEEQEAITHLFTSLTDPDASRTELTRSLIFHLPAPK
Ga0209060_10000007146	F103195	GAGG	MLGQSENEESSDRQCQGIAAGQPRCNLGATVHCNRCDLWFCDIHAEDEDWHSCMKASN
Ga0209060_10000007171	F007286	GAG	MDKFEEIGRDIEEALKRVRKFVEEEVAPETEKRTAIFLREASEKLTEAAGWLEKRRAAREEKDSSKVSS
Ga0209060_10000007278	F075228	GAG	MAVPLRLFIEVILAVLGGFILWLALVSHKFPDRHAPSWLILGVVLMLWGAVTFFRARGMRTYWLDRVGGISLLLVGGLVLVISRAPFEYVLPLFAATGGLLVMRGVVGTVLALRN
Ga0209060_10000007421	F053506	AGGAGG	MNRKRLLLACGAALLLMFAAAASAANSPLPFSIFSARTIYIDNQSGFAELSNVAYLELSRWGRFEPVESAAKADLIVVLTGSSYVRVLAANETPTYDAKKVGLRPAELPEAAPAGFTRVTLQEVKSGKTLWSGLVKTDGPRVKGKLLDGFREAYDQTDKIRYKR
Ga0209060_10000007497	F101777	GAGG	MVLARFALASLLALSFPSNTPWEKPPDQWSAADTNKILEDSPWAPGKVTVETKYSQKYKDNVTQIVSDSPINSQNSPIVQNLQISKGGTPDYYVKWMSAKTMRLALEKMHRMRINVVGTQSPIKVEESPDYVIAIEGDEPMRIIRDAKEDSHDTVFVELDNGFTLDLASVHYIDGPDADPLRTEFHFPRLIEGKPAIDANSEKVVFHLRATAKREMQNRNNAIAIRVDFHPKEMRAQNVPDL
Ga0209060_10000007717	F088587	N/A	MSAYNITLFVHISSALLLFFAFGIEWTAISFLGKTQSSEEAGNWLRLAKLAPIINGPALLVAILSGAYLASQIGAFKQGWVSASFIGIAIVAAIGGAINVPKLRAIRTAIPNGGAALGAALQTKALPVSVRLRTCTVLAIVYTMVVKTSLGLSMTVLGIGLIVGLLLSIPVLTRKAI
Ga0209060_1000000779	F004377	GGA	MASVSEGTIRVHRSIAGTGAAFRVAFVPYGEGDDAKPAGERAFHHLQEVRAFLKVLGVGADYIKDVLRQLTMGRSAWVPNVSISEKVLRNAGFVSIGNLARSN
Ga0209060_10000007934	F000043	GGA	MFYQLGWTTLPGLRGLSCSEFRAVATDEPDNVQGVAAEFASETERDEFLRQLETEFASRRFTNAADAFDTVKAYVLERAGNKG
Ga0209060_10000007995	F016555	GGAGG	MASPKVAALTRQDIIKTARNFKWHRQMPKWTTMVDGTEFPARPLVLEAAGVPPNDSTNSHQAVAILKDRGFDVRYEGKSV