Scaffold Ga0209060_10000003

Overview

Basic Information

• Taxon OID: 3300027826
• Scaffold ID: Ga0209060_10000003
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1758854
• Total Scaffold Genes: 1471
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 980 (66.62%)
• Novel Protein Genes: 20
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Associated Families: 20

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000131	Metagenome / Metatranscriptome	1986	Y
F000426	Metagenome / Metatranscriptome	1154	Y
F000508	Metagenome / Metatranscriptome	1069	Y
F000534	Metagenome / Metatranscriptome	1044	Y
F000595	Metagenome / Metatranscriptome	999	Y
F000602	Metagenome / Metatranscriptome	995	Y
F000612	Metagenome / Metatranscriptome	985	Y
F000749	Metagenome / Metatranscriptome	908	Y
F001318	Metagenome / Metatranscriptome	724	Y
F001431	Metagenome / Metatranscriptome	696	Y
F001800	Metagenome / Metatranscriptome	632	Y
F002898	Metagenome / Metatranscriptome	522	Y
F006810	Metagenome / Metatranscriptome	364	Y
F007325	Metagenome / Metatranscriptome	353	Y
F007490	Metagenome / Metatranscriptome	350	Y
F008269	Metagenome / Metatranscriptome	336	Y
F009101	Metagenome / Metatranscriptome	323	Y
F012895	Metagenome / Metatranscriptome	276	Y
F048481	Metagenome / Metatranscriptome	148	Y
F087522	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209060_100000031084	F000612	N/A	MTNVPIVDQPRWPALDAESTPAFLDFKLVLAATDEPVKYEDPMRQYRFQGFKATAKLEASVRVPSIDFAFKTDPLDTSKCDFAVMGEESNGRYYEAGKS
Ga0209060_100000031167	F012895	AGTAG	MYVEAVVPVVGPQVIENKPVIDAKFLSLAFISTASTFSDSYTTLFATQNWRAGKTGVCNAEVQSAYLYGTHPTTGRVYAVATAKSAGSIFAAYYLRKHHSKFWSMPLFVNTAISLQGTTQNMMSCN
Ga0209060_10000003181	F001431	GGAGG	MWSIQDVSAEELARLLHHYRGALADDSHGQAADGSASSWDRTSPSERKLMVAAARLALLELATTASPAEHRPYFAMPGKADWGC
Ga0209060_10000003199	F008269	N/A	VFFAILLFTTSSRAADPATITFSLDFPQSDPEHYSIAVNSDGHARYECTALIATGSDDHETYQTEFTLSEPTRARIFDLAAQAHYFSGKIDSGNRKLAFTGAKKLTYSDGQRNNTGEYNVAVQPSVLQLTTLFQNLATTLEYGRRLEHLHRYQKLALDDELKRMEEQARHGELAELQAVKTTLQQIYDDQSVMNVVRARAERIMEMPPSSTQR
Ga0209060_10000003244	F007325	GGA	MQGLRTTGASCTALAVILLCTAALAAEPSVEELKARFASANIGERPRLCVQIAEKQETEANRLYSANDFDKAQNTLSDVVAYSELARDYAIQSHKYQKQTEIAVRGFARKLGDLMRTLPKEDQGPVHDAINRLQRVRDDLLSAMFPKGAK
Ga0209060_10000003299	F001800	AGGAG	MKSTFKTLTALFSVLLAGALLTATAVAQLGASGAGNSRDNGDKLIQVAELEQQIHATFHAAVSVHDPVNGDSSEVITQRIRQVLSIWAPDAELTTAAGNYIGNGDPDNPETCPLPSGDTSATGQQGTLCTFFKYVAGGLQQANKFVSLSPAFKTKYVPVKDRDGQWKSSVYFECHYFDVSLDPATGQPSWTAKSHVDLDGEAKKVDGRWLLTKVSSSAVSVPVP
Ga0209060_10000003347	F000426	AGGGGG	MKDIHEVLRQKQSKYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLGEVEEGSGSADAMAAKAGANSSAASAKPRPAAPRWP
Ga0209060_10000003366	F001318	GGAGG	MKKSLWILTVVMLFSVLAPSQTTASLNAGKSSSFWNDPYWHEAAPDDRTFFPKDMFWGWAQFDLAPPHNEIDPNLCAGNASQLGGMNDPCTMFARYMLSGILEVRPFGRGPLRRLMVYGQPAFLFGKNIPKTLYTWSPEAIGIEHSWGVGIYVTKGFEFRVTQHFLFDRLGARSGNVGVGDLGTSGPWGRYVTVGVRKSFGTRRW
Ga0209060_10000003367	F000534	N/A	MPQEISVSYQAIKSKVYRLIDALVVGEKNEAEVQESIRRWWDLIHPADRPVAQKYLLMVLGRSASALDAVGDGLFAAGGAQAAHHEDAPPVSSKRMRLIDRAVRETGMRSTV
Ga0209060_10000003394	F000595	AGGAG	MDGLTGLAAVVMIFGMPTAVLGMYTFYRVRKLRTEERMAAMQRGVAIPMEPELPESARSRRYGILSIAGAVGYMLAFSILAKYEPDAIEAAAFGAIPFMLGLGYLLDSLLIHRDGKATA
Ga0209060_100000034	F009101	AGGAG	MKRAIRMAILTVGLVGTFIAATAQLVPAADGGPILVCPPKQQNCQINLPPK
Ga0209060_10000003410	F002898	GGAGG	MARSDRKRSRWKSLIDFVKRMLGRRPAQPGDPYAYVMAPVRGGPRGRSGAAVAEIEDDSFRIFPPRR
Ga0209060_10000003452	F087522	N/A	MIRLTIHHRTQVTMMPSEAIPRRLGHISFAFSLALLAAFASAQTESPSRANTAPKKLLLQSELKEGEVLRYELDAAGSFLPTADASGAILSPPRGPCDYAMSAIVTLRPQPPDKDGNTPVEARYSETRMTSVRCTLFSSADFERRLTALQASTVMFRVGPHGETVMRHDQDGYFKYWDGGDLLRKVTQDLLQTEFSPRPVAPGTSWQARGQFAYSHDRALKDLELSGSDLRFENMVQVDGKSCAWVTSQYVFSPVDLPAVGTASGGRFIPAAGNNAVAAVLHISLLLDPESHHVAWLHRTQTIDNKLTLASPFDDSDPPDDPDETPGADGENPMPDLSSMRSDNPGRYPFMTFHFQEEARARLLPDQRSSEWLAGLKHFEGTPEPATGTTPVPVTKTLLPSPIVQAAKPEMVKRTSHVVIDSDSLGSTPAGFTRFEKGLCRDTWFCATASIAMPGDVQITEDTPLHTVYLAQWRDAELSIAIGPSLDRRHLGLTEDEELNKQAEYYLANYVWLALKPGIATNSSSATLDGYPGMIVDFRATQRDMADMHGVLGLILTPWSKTVPISCTSDRTFTPELQAVCEKIITSVSLRR
Ga0209060_10000003486	F048481	N/A	MGLPPEGALNMAAWEMIRDLVSAEPSLNEAAWESLRGVVALLGTGDSEPEPASRYRRAG
Ga0209060_10000003492	F007490	N/A	MKAVAIKKGQARERAPGFVEMGILRCDGCGEEFALFQDPGFTDKAVAGRQAHWLEKVLADEHERGHSHADRIQLPD
Ga0209060_10000003607	F000749	N/A	MTENDAKMGTGNPFFEDDTATVTIRVSGKLFQTHLLYLEQLVHSAGDFRLWPVLNLAGIEELDHAALHYLTQGENQQFGIISCPGFVREWMEYERARPAA
Ga0209060_10000003631	F006810	GAG	MKRMLLCVLLLVPSLVPAQTRIRRQGTIIRMRMADCMESGRGFVSAMSGAPKNESVGQCPEYVLVADTVVYVISGKASEQLLPMAEVTRFRFQKNEMLIRIDDASRESHFRIKAMFLRPEWERNEKIEEAEANAIISRHLDPTAMRTR
Ga0209060_10000003757	F000508	AGGGGG	MNNLSKVVTSLRVEHSRLERELERVGKALDALGQAGGTKFKRAKRFLSKEARRRIAEAQKLRWAKVRKAKLAKS
Ga0209060_10000003758	F000131	N/A	MGLGTIVRRASLPLIVFIALIRPCFAADTLTLDALVTPSTVIQKDGHPVTFAIHGLIEFKSLSEVFPYINSQQHRWTPEALPRNTDQIFLGRELLRHAIESRVVSMSDERPMELLITHTAEELNRALAAVKEPVPEGYSGAFLEVQEKWKRSLNCWSASPSIAGRVLSNWYPIDEGIQLYGATYDSTEHFWQAVKYHPDVTVGQLNDLLVELQHTDWTEWLKDLDDDASTYIPNAYAVEFLRYNLKPERVQWFRDQLGGHGLQTSDHARQVQQRGSVHFRFTAFEEKVLWGDLADLFHLLYYFSLADEPIRASLTERHFDAVYLGDQHIDFIGPEFRSLMLEIWKVKYLQIPRFREVISSIPTQIRLEHFLNDGDSPDIPIPVYVQYLNQIRELAIAAGGKAPRKITKPRPSGTT
Ga0209060_10000003876	F000602	N/A	MALIRSFLFSVSRGWLAALTVYPIARAQAAVVFGVIVTFLYRSKSQEESVYNLLWAVVFGFATLNILSLAARRLEPSRRGLSFGELLAVLVVVISVFLLGWEMLNLFHVFPIKLKG