NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10013856

Scaffold Ga0209039_10013856


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10013856 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4427
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F004823Metagenome / Metatranscriptome422Y
F006278Metagenome / Metatranscriptome377Y
F010114Metagenome / Metatranscriptome308Y
F017965Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_100138562F010114GAGGMIIEFNDDETRLLYNVLLEQAQEHFSYASTSEVADKLYKLATRFGRPVRERPNITIA
Ga0209039_100138563F001596AGGAGMSRFHSITEAGDARNYASPAEIVACFQDQRNVLSRLAFLITGDHATAEQAVVHACEMTLQGNSPFREWLFEWAKAATIASAISHGTEAIRICEAAYKNRRCPHVEHLSQGDAEERAASLDLILGTDVQTLIAALDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHAMTWLHDGHVKPMEENHDASHAV
Ga0209039_100138564F006278GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPEGLIVDLTEVSYIDSVGEQLLKWLASVGALFVAGNIYAIAVCDRLRLSPMQRIAERRKRRHGNIEERSSINHSHPVEAI
Ga0209039_100138565F017965GAGGMDSKPNSRIALTDMSEKIGQSDALYLFACHLEWLTKRNLAAYQELLAALDDHDGDIRRLAEYLLHRSSPRPERTATSIESW
Ga0209039_100138567F004823AGGAGMYATKAINGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGHKSELLLNEPDWEWLNANEPAFRRAAQHA
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