NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10009681

Scaffold Ga0209039_10009681


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10009681 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5736
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F015314Metagenome / Metatranscriptome255N
F069486Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0209039_100096811F069486N/AVINPKTILGEWVTALQSCPDLVAAIGGDGNNIRAFMEGLATDNNLRLAILQMPPGSILIAWNGTTPRRLTGGALHFAHRFAIYLRAPEQESTATYADLFWLLVSARPTGAPSWESLLHLQIDPDCY
Ga0209039_100096812F002261GGAMPNWPGIEAFVDGVMLQTFGEPVVYQPVQAGVAHGNAFTVTAIRHLRVREESGATANFEEISVNPTDFANPPAKGDWVTAWGVQYVVTIVRQPDAYGMLNLALLQRS
Ga0209039_100096815F015314GGCGGMMLRRESWARLTRGMVPPLYVLRPLQGFTPSDIGDEYPAPDATNKVQLMRARQLYEQRRIGTQTEAERALSKLPQHEPAKPGKEKRHGSQSGKNAR
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