Scaffold Ga0209039_10006642

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10006642
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7604
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F005283	Metagenome / Metatranscriptome	406	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_100066424	F005283	N/A	MLELSPLQMATMERLFEAGFRPIAIAPYENALCVHRGECAAVLAPVENGGLRLLAPATVMVDGNLSVRLKRATGDVFVWKKTEVAATPERLKELEAFRGELVGILEMGGKQ
Ga0209039_100066429	F000188	N/A	MSVKAEMAFDVCWEVYRGAREVLEAKRGITSLTWEADTKYAWRPDLRPKLKDWVADFALAGQAALEGPERASRLVLFRLYYLGLVPYEQARHFLGLSERSWVNWAEEIRRRCGEELLRRDLFPPRKYFNGGD