Scaffold Ga0209039_10002404

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10002404
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15948
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014825	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_100024041	F014825	AGGAGG	MAGNKLTIQLTTDQQTQIRDATGKTVTELNIDLASTGQISEKDLQKLSGGVQKIRE
Ga0209039_100024044	F014825	GGAGG	MAGNKLTIKLTDDQQHQIKTATGKSIKELNIDLAATGHLTDKDLADVAGGSGRVILKDTIPP
Ga0209039_100024045	F014825	AGGAG	MAGTKLTIKLTDDQQNQIRNATGRKITELNIDAAAISHLTEKELDQVAGGAGEIVITKDP
Ga0209039_100024046	F014825	AGGAGG	MAGSKLTIKLTDDQQKQIKNATGRSIKELSIDLSVVEQLADQDLAKASGGIHHEGM
Ga0209039_100024047	F014825	AGGAGG	MAGNKVTIRLTDDQQSQIKNARGRSITELNIDVAATGQLSDKDLDQAAGGVIIEFGKI
Ga0209039_100024049	F014825	AGTAGG	MAGNKLTVKLADDQQNQIKTATGKSIKELNIDLAATDHLSEIEFDNVSGGINFIKADKG