Scaffold Ga0209039_10001280

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10001280
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23851
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (95.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F036810	Metagenome	169	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_1000128012	F014894	AGGA	MRMSIGIPGFSIYFEHHQVKPFIKDHSRKAKDLFNERVVPSVLRGTCKGLEVVANNTADAHDYLIGKLKTKQSA
Ga0209039_1000128013	F045709	AGG	VNLTPSQKGSFLAGVGLWLLIWASLWKADDIAGAMRIQRWFNSTRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLLLPCLEKLLRQRGTLNATLP
Ga0209039_1000128014	F070426	GGAGG	MILELIVATEASALSASWIRRSRMRRQQTLMCGSTAEINLPFLDQYLRQQTPHPTRLQTFAAQKLAGVCRHVVHTRAFELMVLKLIQSASRRYRRESEISKVKVIL
Ga0209039_1000128015	F036810	AGGAG	MTQPERTRVSAWTRLQSFAVGKYKAVQLSIERRSFERKLERIVRAADAHHSCGQLPGASQFKLLRKCADDLCANLAQRWDISPELLEAQIPAITKLKALADPPSKPRPTVLVTLGVAGAVALFFLMGVLAGLASVGYHLIGGR