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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027825 Open in IMG/M |
| Scaffold ID | Ga0209039_10001260 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24093 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (74.29%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000188 | Metagenome / Metatranscriptome | 1692 | Y |
| F000885 | Metagenome / Metatranscriptome | 849 | Y |
| F005283 | Metagenome / Metatranscriptome | 406 | Y |
| F015120 | Metagenome / Metatranscriptome | 257 | Y |
| F059669 | Metagenome | 133 | Y |
| F076450 | Metagenome | 118 | N |
| F079694 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209039_1000126011 | F000885 | AGGAGG | MASAKAVFIGEVAQIAGVGAVVAGVVLSLHHWGAAAALLGGFAAFFVGKKLRGA |
| Ga0209039_1000126017 | F076450 | N/A | MRGDSQGRSVQIGRYLNSPVALNVGVTSASVQLNPSRHYRLWGSVDLFFQFGPTGVTATLSSHPAAAKLDYLHYTDDANTTLAAIVSSGTGVLFISEIDAQGV |
| Ga0209039_1000126018 | F079694 | AGGAG | MPTYQNATPPNTLYPGDVGYSWNNEAFPGVNTSGSQFALSTPGGYAPETGFTVRWQTIFGSAPSAISIKLQGAMADVDAEYQDMDASTQVAGEARQVTGVQAKFLRIKLYSSTGGSGLTAKILV |
| Ga0209039_1000126023 | F000188 | N/A | MLFRSRSSEVLAKDTGRRDEFAEVEEEEQRRAEEKMSVKPEMAFDVCWEVYRGAREVLEAKRGITALTWEVDAKYSWRPDLRPKLKDWVADFALAGQAALEGPERASRMVLFRLYYLGLTPYERARHFLGLSERSWVNWSEEIRRRCGEELLRRDLFPPRKYFGGGD |
| Ga0209039_1000126025 | F059669 | GGAGG | VNTYYTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLGEEAVSAPANSENKGRRASDNFLGDRIVSPRASRERA |
| Ga0209039_1000126028 | F005283 | N/A | MVDLTQLQMQTLERLFEAGLRPVAIPPYESALCVHRGECAAVLAPVENGGLRLLAPATLMVDGNLSVRLKRAAGDVFEWKQKEVAATPERLKELEAFRAELVGILELAGKQ |
| Ga0209039_100012607 | F015120 | N/A | MMTIQNLIRGFFRTRYVGLLEEEVARLRAENRALLNSLLGTAGFPPVEFAVPVKPVELPRLRKRSWQQMQMKKEQDAMKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |