Scaffold Ga0209039_10001093

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10001093
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26102
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F008540	Metagenome	331	Y
F015428	Metagenome	254	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_100010932	F015428	AGGAGG	MSGILEVFLLLKAGSGIGFLVTWRNRLLASKVNYFHPPHNRKSPIDKLVRGQTGPVVTRQDQLFVKLADGLTTLVRRLVMLDAFRQLMRALALPGSPLRRKLSRRKRP
Ga0209039_100010933	F003859	AGGAG	MDKPNAEYTNIPGHSWPGTNVYKSLKLGWQWRRLRWAVVAASEAAQGHEANGLPPGSREFKTLFTEVAAKIQEYSNASGEPLDALKARLPAFCALERLANPAATAPRNKAGLTLGVLILALLAPIGIGALIGLGTGMAHWIAHLFG
Ga0209039_100010934	F004817	AGGA	MPKTVAIVQLPEILRKRSSHLVKLAGKIDSFSLLLQETPEGELKRSIECQFHTMVFATRKEIRKYCPRYRSLPGEGILDFNTDCASGQLEPGDIGTAPPPKRGKLCETCCFFVGIPEERSSEMTMSMAPQDLVLVV
Ga0209039_100010936	F057060	GGAGG	VNYQHLHFQFPAKPFQRWHVIEDRTVPRGMRFRHARQPGEKPDPKVNFGVEELSARLEHAGVEYMRIALGNDSKSFALAEVLLTFGMQGESPEDGSWYPVIPWVRDDGFYAVCLRERMPYLDACRLFGFDVPAGKPSVPKRIKRDVARGRTSLFGELLETRELNQWDLLHTVLLADGKTTFEVATYNPGNRWPEAWTSGAALASPRGGAILTGHPVKVGDLIQITGAMPNGQIKGNCLIWDIDHDLVVWDVKPELRAWQGQIYLSVLNELHGSPANLDVQTASNLDLAKVRDHKLIQHLCQQYACDVFDLMQDDEQVKEEIGFYNPAAWVDEDGNPVINENRWKLWRMYSAGLPAMQFRNCRDAFYRTQMESPENNNPDRFRIRFREPQDLMTVQSNELAGAAVRRYLFPEPFVFDKQGYPHWDRSTLPDINSVYLGGFDGEFISLRNPNASHKESGKLRGRKLQRFADIDRGAAMFVHLGFAASPEGTPGMAKSFNGADFDDSVLALLDPEIVQHWNNLPAYPWVAATPTEVKVIDDGDALFQRHPRVRSYDGDYVYCMLFDAKRGQTGIGYVVNAITWFNLLWLHRESIMSELRAMQPSTQVAEAIRWMEQELPESRMPMVASRLEEIIDAIKLNRSSIDWASGIITEFRETCPVAPKFWWQGGYQGQGRIPRDRIETGNEPIPVTTAMDVAREQWIELFQKARRFADKESWRNCWRVPPEIRSFPTRPEAAGAARDFWMFYNRTREAKKAEFLKEGRDHRGKKVTSEQDAGIAAYLYAEEDIHDRIKASGMYLDIYAELVKLVFDRGLTLEPPRNPDGTVKPIADGILGGPHTLDGLLDIARAAGVTRSHVPLTWESARVRQDYGDLNLDIVVEDTLVRMAGTTANWIGIVDLPDGQYRMEHGLVVTEDTREALPQEPAVALVAVNGFEQRLKDQRLEQEDRQRIEAELKTFRAQVCNGVTIKPATYRNPETEEDEAGAEVFLEGAFEPLGWISQEHLAAVTGELKGVLVSGGQYSLKVLCPLPEQGAQG
Ga0209039_100010937	F008540	GGAGG	LRTYQPERALLFRESRKENRQELADMLGQIALERAARLPPSIPLVPLEAQVQESIRKTRQDVQRAKDLQSAHILRWLQS