NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10000547

Scaffold Ga0209039_10000547


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10000547 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36295
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (60.53%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000525Metagenome / Metatranscriptome1049Y
F000828Metagenome / Metatranscriptome872Y
F008957Metagenome / Metatranscriptome325Y
F050790Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_1000054725F000828GGAGMTIFDEKYRVVAIEGDRLVIRGILSGDVLAIVNPEPETPLTPEEYPLGKLIALTDPSAAPLN
Ga0209039_100005473F000525N/AMRTAKTLLLRVLLCLVLLSLDLGCSPRDFLTRRLAADLISASDAFKAPQLFWLKTGIVSNKDFSSPDFMVLQRRGWIIGTGQKCPAGVDPPPCWDVLLTPLGVDTIRPLITSALPDNGPIGIQVARRELLGISGISKAGNFADVEFTWRWVSINQVGTALYDSGVRYRSTVGFRGYDDGWRVVDQNVPSNQTLDEALRNAQPTAP
Ga0209039_1000054731F000042AGGAMKNIKFVVKVNRGGAHAPQYVLRIDRLPIQTTTNRKLALVMGRFTAEDAVKCMQNSHCNPELVSVRVSA
Ga0209039_1000054733F050790GGAMGARRTPANLQIDAGFLSQLREPVAARESERGIACLRSHQDLIAKLDPSQENAVHLLTHLAIWIDLGFSARLL
Ga0209039_100005476F008957GGAGMIDPAEQEKPEKLKKSSWWWPGVVASSLAGAAVVAFRGCWHSNMGWPVGVQGYSYQVCLNCGAMRLFDEKTFKAYGPFRYGLNELIAWERSTKPKSHPVADVRRSAL
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