Scaffold Ga0209039

Basic Information
Taxon OID	3300027825 Open in IMG/M
Scaffold ID	Ga0209039_10000490 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027825 Open in IMG/M

Scaffold ID

Ga0209039_10000490 Open in IMG/M

Source Dataset Name

Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38491
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (70.59%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

38491

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (70.59%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Calvert Island, British Columbia, Canada

Coordinates

Lat. (^o)

51.62

Long. (^o)

-128.09

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060538	Metagenome / Metatranscriptome	132	Y
F089732	Metagenome / Metatranscriptome	108	Y
F089733	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_1000049015	F060538	N/A	MGRPVARLQQMSAQFRWLARVVAALAICLSCAFFAPAQNEAARKYTWKPLPFAILRFNDEAPNSWNIYHCEKKGLLLVRLWKRYLFIDVEEEEVYDLDPQKLTVQGDTVSWSFADLPDKPIYTPDWTDRNIGRMQRLRFRLGKNGHFLELQLPFDINGRPIY
Ga0209039_1000049032	F089732	N/A	MSETLNLRNVEWALTTITELILLVYLLRRGLFRSHPVFSAYILAVILQSVLMAATYGIWSSQSHRAWLIFWLSQLVVETARFAAVVEVARRILSPFSGIWALGRRVLLMTAGSVLVYAALLSREYWFKLPLNVDRGVGLAVATVIVTLLLFARYFGLPMDHLDRSLCIGFCLYSSFCVINDSLYDKWLVGYLNFWNFLGVLTFLASLFLWIGAARAYSEAAPARAPVVVPQELYEKFSSELNVRLRLLNEQLNKFLNPGSQR
Ga0209039_1000049033	F089733	GGAG	MNITIILFILLAVLLIGALVWAIRPPRRKLLSINDVLTALSEEHHYSRLPQILQALQPEDTAFLRDRGLAPLRRRIRSQRGRIALLYLDCLQEEYEKLLEASRVVAAMSPELIALDEAERFKLNLRFALGCRYLRWKLRLGLEPWGGFGLLSQMASGMALRLEGATSQIGERTAWSLEFSSILKERNNGTR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209039_10000490

Overview

Ecosystem & Geography

Associated Families

Sequences