NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10000347

Scaffold Ga0209039_10000347


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10000347 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45223
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (84.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001116Metagenome / Metatranscriptome773Y
F019893Metagenome / Metatranscriptome227Y
F021444Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_1000034722F001116N/AMTFLNTRYKLLRELMPAELRRLSNVATVYGIRGLSFEGHELVVEYDASRIHEAEVLNTIRSAAIPVAAEKPIPLGSFDYRGEVRDFAWPTTGLSPVNSK
Ga0209039_1000034732F021444GAGGMTTQNVATPPVSGKILEAEVKISGDPAQPLPLACGLYAIETPEGVWLCAYYGSNRSVFDYLPQKGGELNEATAGIAFHKKEFVPKEEYQASRWEHFKHANLMTYGSHGG
Ga0209039_100003477F019893AGGAGMKPVVILAFMLLSLQCGSTMSVVAQVAPSVTQSPEITFHSSSNLVLVDVIALNAKNGLPDKTLKRGDLQIFDNGHPVSIETFDSGTTTRPLALWFVVQCSMQDYDSQGSGLFRGRISLFIPALENLGKQDTVAVAHWCDNGDSKLDLLPTSNVEAAATSLEHVLAPTFDPNNHDRPGELALQKTLQLIVDITRPSKPEPLPVVIFLYGDWSGMDRSEADHFIDELLGTSAIAYGLKDRRSPHMWFPLPGEQKEIAHYIATQTGGQYLEVTPETYATGLEEILRQLHFRYELGFQPETMDGKRHQLRVKLVNAVKNRHKGVRLRYRAAFVPISHGIR
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