Scaffold Ga0209039_10000085

Overview

Basic Information

• Taxon OID: 3300027825
• Scaffold ID: Ga0209039_10000085
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79990
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (82.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002273	Metagenome / Metatranscriptome	576	Y
F003591	Metagenome / Metatranscriptome	478	Y
F068371	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209039_1000008554	F068371	GGAG	MPESVRLPGYRWLMFLRNIPVRVGIYTGICLSLVFVIWLVLSNRVPLLEPLAMARNIVAVVILVSFATLPLLRFYRSPGDLMVSGLLAWTLLSITYRFLCMVFVLLGEKYSTFQVFVLGAVVYLLGATLSWIGTMIWRVRAADISHPHH
Ga0209039_1000008557	F003591	N/A	MKQVLASILTTLMIVAMTFTAMVILERATLYVISIESPLPRAGAIAAEILLGIVLLLGTVWLATHLAVLIFATKHNPPEGGKLG
Ga0209039_1000008568	F002273	AGGAG	MDGNMIGLVAVVLTCGIPLALIYAFYRVRKLRTEERLAALARGAEIPMEPELSQYARSRRAGILLVCGGVGFMTMFGVIARVVGEPETLVAAAFGILPLAVGIGYFLDAALIRRDLKVS