Scaffold Ga0209040_10078110

Overview

Basic Information

• Taxon OID: 3300027824
• Scaffold ID: Ga0209040_10078110
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1921
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000863	Metagenome / Metatranscriptome	856	Y
F007371	Metagenome / Metatranscriptome	352	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209040_100781101	F000863	N/A	METPKTNNGVGPAAGPAYRLPEDGPIPDLPLYERLIADGIAAADSRGSIVDHVTARRLAIWLAARPQEPAFAQGLVRFVDTGVISPALKTQLRIHSRSGTYADQPQASRLMEYCISRGADLGPVCEDFGPVCDQIDRADVMPAGLGEHAR
Ga0209040_100781103	F007371	N/A	MKQPEESELRRAPGGRRPPEYVIVVSASDWGKEHFPPAGTNLWDARQTDKDRHREPEPDLEAEP