Scaffold Ga0209040_10061520

Overview

Basic Information

• Taxon OID: 3300027824
• Scaffold ID: Ga0209040_10061520
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2226
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002139	Metagenome / Metatranscriptome	590	Y
F018589	Metagenome / Metatranscriptome	234	Y
F051431	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209040_100615201	F018589	AGGAGG	MYRPYTNIQADPRPFRDVESQLREFSQDFATSFNTGNYDLAAGLFTHDGALMAPHY
Ga0209040_100615202	F002139	AGGA	MTNRVAYAPQDFQKMCKQAERDHENKKLVVLMERVKRQIAERENGGKNSAHSERTPVAVMNADSGVVRLPGRSVPLER
Ga0209040_100615204	F051431	GGAG	VFYRRTLTIALFLMAGVSLAAARDLAVVSNKANAISAITLPDLVKVCKAQTNRWPDGKPVTLIIRTPSSPEMKLVLERVFELPEAQVKDLIATANHGRTNHPAIMIVDSDEDLVNKVASIPGAVGVVDVYS