Basic Information | |
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Taxon OID | 3300027824 Open in IMG/M |
Scaffold ID | Ga0209040_10050053 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2522 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018219 | Metagenome / Metatranscriptome | 236 | Y |
F103712 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209040_100500531 | F018219 | N/A | RALDADPAADLSPLAAARQAGLDEPEITRTLDSARKTSQARNHQAEAVN |
Ga0209040_100500533 | F103712 | GGAGG | MTDDRMNPDLIIEMLDMLDRHGYARSDDEHTARAIVLISDLAHIYQDSQDHPFGPYISEIPPRTEPEPLTPAGQDAVLVPADQVRNLLAALDIAADYKRDRAELCADCTGQTCPACESRLRDAQAYDHLSAQLIQPTEASSAARHPEPGPAAGREAGQ |
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