NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209040_10043523

Scaffold Ga0209040_10043523


Overview

Basic Information
Taxon OID3300027824 Open in IMG/M
Scaffold IDGa0209040_10043523 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2752
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071588Metagenome / Metatranscriptome122N
F087611Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209040_100435231F071588GGCGGMTDLQGVIGLLYRADWTGLSLAADVRSETDQDLLSSRVRAVRPSWVPEGRGRSSRGVYPEGGPPTWADAASEEPGGYHSWHARLLVAPGGRYRQEYLDEPSGRVIGSDGERSWVWHEQEPGPPVEVRHRPPLHQLFCPSELLGDFTLEVRGPVTACGREGIAVVATPRTGNEYVPRLNASTLSDHLEVIVDAELGILLRYEEAFAGQRLSLTELTAVVLDPPEVADLSRFAPPAGSRISQDPEESLREKRSGPAWEVEKTVAGLAAGGLGAALRFAPRCPGRPGFSEDDLQSAMPPAEPAVLEAEGGPPPPDDLLYLMYRSGENPAITATRDEWQDLSAMTSQLPDSMRAMGYGGFGYMIDSLTVVTRGKPVAHTLCRLRVDGRDKYRLDYLTRSGGNRAKTIACDGEHRWVVFAAQTMVGPAYPLSRDVAYVVDSSWLLGYRLSGGAEIIYRGRRAYQLRASRDGDGWHPAPSLFFPADVIVDAELGCLLRLISFAGDRPASWYELSGISTEPVPPGEFRVDIPPGVRVVEATGNPFTDSAAVMPGATGSVVRTAADVVRRTSDAVSATRSFLDDLRGRSRS
Ga0209040_100435232F087611AGGMSIPPSATARQSRNCSLCDVPYELGEVYQLVYAFIRKGGKLPVYARWIEGSLTTQTSKPAVLAWRQSRPR
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Institute for Fundamental Biomedical Research
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