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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027824 Open in IMG/M |
| Scaffold ID | Ga0209040_10007872 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7641 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012287 | Metagenome / Metatranscriptome | 282 | Y |
| F013471 | Metagenome / Metatranscriptome | 271 | Y |
| F045228 | Metagenome / Metatranscriptome | 153 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209040_100078723 | F012287 | GAG | MVARNSPSKETRKLRALTKGERRLSVIFIVALFAMANFYGLGYLYDLMSDSSRDLADLRGRENANDIWLKEKDIWLKRKEWIEKVQPRIHSDQVPQSELLESLTASAKANQLEIDEQSFGEIRSTPNYQSVSVRFKLTGALQNAIKWLAQVQQPELFQAITSFSLKSGNEPPTVSLELEIARWYAPKS |
| Ga0209040_100078724 | F045228 | N/A | MAGKLDKARVHFLRAVDGDQWEHWIFADSKQAQFVRRLASPAEVHQQVVVSLPAQCTVTFPAWFATNDREVIPEMLHLQLEKRGLLGRNGGVSAADFRVIESRENRTLAIATILQPDFPKDLVFEKVQRYEPSVYTFPLPPDRLLIWRERGRLTVAATRGREPVAVQVLGDSALSDTAALELKCIAFELESRRLCERLLGITLWGDFTVEDGERLERFIGLKVTRESVPPPNLPKIKSKLLPPEVYLLHEKRRRRGRIVAAIAWLAAAYVFAVLGMIGYIFWQRQQADDLRRDIDRQGPVVAAIQETADRWRQMELAIDPKVYPVEVLYQVSGVLPHDGLRLTALEIQNGKVVIRGEASTAPAAFKFSEDIKAKPELQMFSWQMPSPTLRPDGRAEFTIEGDPKIASIN |
| Ga0209040_100078727 | F013471 | GGA | MSIATNHRINHRSGGFVLWEVMLALTIFCVVAVALTSALHQTVDASIMLRDESQVRIELQNALTVAASQKLKIGKSDVQEGDGRIHYEREVRSVLAKTAKGVVVPNLYEIVVRAFWRSAGQNRSEQAEVILYQP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |