Scaffold Ga0209040_10007383

Overview

Basic Information

• Taxon OID: 3300027824
• Scaffold ID: Ga0209040_10007383
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7939
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F044385	Metagenome	154	Y
F098478	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209040_100073837	F098478	GGAGG	LKTKGAKAADFKKAAAGDKPEPNGNGKAAKGAVAKIQTLAPADTKLVKRGFVKMFVDFVVKRGLATTDDLAAEFVGRQVDGKKITKERVLRYAHWCVKNGVLKAK
Ga0209040_100073838	F044385	GGAGG	MVTRNNSGEVVNEMNVSITQDGTVIWTNTMYSNGRPIVQNISVRDSQGSVRTTNVIGGKILP
Ga0209040_100073839	F006757	N/A	VRMRNFAVLPPVKGTVRMALLNLADFRALATSDLIAMARALPGGTKVHIIDRLTAIVLLLGTRLVDSH