Basic Information | |
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Taxon OID | 3300027824 Open in IMG/M |
Scaffold ID | Ga0209040_10000072 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 59058 |
Total Scaffold Genes | 61 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (85.25%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002913 | Metagenome / Metatranscriptome | 521 | Y |
F017708 | Metagenome | 239 | Y |
F029198 | Metagenome | 189 | Y |
F033229 | Metagenome / Metatranscriptome | 178 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209040_1000007212 | F033229 | AGGAG | MYCTTSLNGVPTIQRDGQNVLGVWDQNWEFANEICDLLNSFEDDPHIFLTEHDRKWLKAMDRAFRKVQHA |
Ga0209040_1000007214 | F029198 | GAGG | MDSKPRSRAVRVNGEVIALHCWACGTAHCVNLELCVPGELTDMVCSNGNCRMSMFLVNELVVDDRTSKQMTRIKLNARATYSRFWK |
Ga0209040_1000007223 | F017708 | AGGAG | MAKVIEFYIPKNFRKPLRTVAQPQLGKIIEFCPQTKRSA |
Ga0209040_1000007254 | F002913 | GAG | VLGQLTGKPDGRTFILHLLNYDHQVSAENVKVRLEPSGLVNLRETKDLSGWEVKVLSPDAAQPQVAGLSLHGTVAEFTLSRIEHYTVVTVSAKTAR |
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