Scaffold Ga0209633_10005606

Overview

Basic Information

• Taxon OID: 3300027822
• Scaffold ID: Ga0209633_10005606
• Source Dataset Name: Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10974
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location

• Location Name: Coal Oil Point, Santa Barbara, CA
• Coordinates
  • Lat. (^o): 34.39225
  • Long. (^o): -119.845662
  • Depth (m): 47

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004928	Metagenome / Metatranscriptome	418	Y
F005564	Metagenome / Metatranscriptome	396	Y
F051143	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209633_1000560612	F051143	GGA	MHESMRIEELERIKTMTTLEAVAYANRLSNRLKSDDCTDKEKQNGVELLGRLANRVSFLKITLEPPTFCQLGWKYFAESGGAYK
Ga0209633_1000560614	F005564	GGAG	MHKLIIGLMVIFFLGDPGLQTLAWLGEMKTYLVAAAIALVSIPFVVSQLDG
Ga0209633_100056063	F004928	AGGAG	MGQALHSIENEPEHTVEIVVHITETLGEQRREDLVASLEGNGGITTAEFCPLRYHLMLVRYDRDLYSSQDVLDRVTSQNVNARLIGPV