Scaffold Ga0209578_10078046

Overview

Basic Information

• Taxon OID: 3300027820
• Scaffold ID: Ga0209578_10078046
• Source Dataset Name: Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1655
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019651	Metagenome / Metatranscriptome	228	Y
F033962	Metagenome / Metatranscriptome	176	N
F085730	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209578_100780461	F085730	N/A	MNYKEENWYNDIVDRLKDYENMDQDEFYDALYQEIDNMVIYNSESKRIVDDLNYDVFQEHDVYGRADSISQAAYAALSDLFEEGDFTYEDYNKLQEA
Ga0209578_100780464	F019651	AGG	MTTLEKFQEESGIKFIEIGSHADIEIGELNTADGYELFYITQDIQNLQFDNEVYYYKPDFDTIMGEILNAMIFGEEYVKVCVYDIEDWFDEYDMLNYLESEMDEESFEEFTNDGQFDTNN
Ga0209578_100780466	F033962	N/A	MTMTELKKYMAEQKRIKVIQWNKERQGNHCQGFTQKEFEQSMEIDRIKSRTRRTHSKGNLWVFNNTKNRELFTK