Scaffold Ga0209112_10143122

Overview

Basic Information

• Taxon OID: 3300027817
• Scaffold ID: Ga0209112_10143122
• Source Dataset Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 798
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007657	Metagenome / Metatranscriptome	347	Y
F061592	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209112_101431221	F007657	N/A	VNWVTFETITGGLLTVQVSHVVSIYDEQGQVKLATAAGGVHILKDISVRRAAAAVSNAGEPAFALAAPQA
Ga0209112_101431222	F061592	AGGA	MSVAPGNDPHQDDQPQQSDDSAADNMKHQLQKDVTSWREGRAEGSSRQATELSVAVTRAIVPPTTAKMRRAKPAATEAKSTTAEKKPFGMSYDGTSRAEYIKLMIARGAR