NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209112_10063825

Scaffold Ga0209112_10063825


Overview

Basic Information
Taxon OID3300027817 Open in IMG/M
Scaffold IDGa0209112_10063825 Open in IMG/M
Source Dataset NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1144
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016727Metagenome / Metatranscriptome245Y
F101809Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209112_100638251F101809N/AEFDRARNRVRMDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR
Ga0209112_100638252F016727AGGAGGMSQKDDAGTERGQVPPSAVYRQLDDQLGPEEAPYEAESGLQRLRGWMGEEEPPDEARAQVEPVSQAERLRLAGMKLDAVERLAQKRVSNARLALGAVVLVSVLAGLGLLFRLSYVPPRVAMPVLVAVGAIDGAMTLAVVVLYRSAMRGLHDDLRLAFGEQAGWRDKPGQAGQETTRPAARRRGGRPLVVLSEGGRYPPLLTFLATVAFLGFAAACVVAFARDSLMPFAITSIVLAGLFLISVLPVVIPAIWAGEGPRRAAQAIFYVMLGGQPASYGEITARHAETAGLAPADERDAGSAEGALPFLFQDSPLGGRVGGV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.