Scaffold Ga0209990_10129870

Overview

Basic Information

• Taxon OID: 3300027816
• Scaffold ID: Ga0209990_10129870
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1205
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005046	Metagenome	413	Y
F015060	Metagenome	257	Y
F053060	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209990_101298701	F005046	N/A	KPQVSYWTHFTKYQIGQFKALAELNYQVLGERVSTEGAPDTGLARQYPSKLTEKPFWLSWDYKTFKDFKLWTWIQATKALDLPISKQAETWFNYFSIESNQIKAKELLDPFRKEKQKEFDSPL
Ga0209990_101298702	F053060	AGG	MTQAGYPIRKKFIKQYLEDKLREYLTLGGLKELIDRKPLILANQKLPAPFYWGLWGNLEHLREAYQEHLAEDLFGPSSEEEEEGEDDNSAVSWDTQ
Ga0209990_101298703	F015060	AGG	MVELRSGTTTGGQNPSTPNLRDPNIPENIEIAGQGDQNVNQAAQVQDSNQQQGQTPVAAQGVYVGGTYPATLTRAAQGTPSYRPPQFAFTTPPARQSQEEYKSTKSQEDDDGSEST