Scaffold Ga0209990_10083494

Overview

Basic Information

• Taxon OID: 3300027816
• Scaffold ID: Ga0209990_10083494
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1570
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002738	Metagenome / Metatranscriptome	533	Y
F006619	Metagenome / Metatranscriptome	368	Y
F043890	Metagenome / Metatranscriptome	155	Y
F045692	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209990_100834941	F045692	N/A	MTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCADLRSEKID
Ga0209990_100834943	F002738	N/A	MHSEKLVIAMSIDTYGLPSEQYEKFFEDNIRFAARLYLKTCNIISAEGAGSVDFKTVLDMYQETVYATNDDCRRYQKSNNPEALKETDLLGIYPSREELLAEIQSVNAKVEALADYLGELVKVTTKGLNGIAENLVD
Ga0209990_100834944	F043890	GAG	MKPMQNTSSWATLNPDSINKLKIECIDEEDGSMTIHIDWDETDPDLQWWTDMGPEGQETFMIDALREACDCYVD
Ga0209990_100834946	F006619	N/A	YQRQLSNVSDFASEIEGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVSWWYAPPADHTSDGRFVLLYTNSGAQAPLSHWRTYKPKEIFTQYDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ