NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209990_10017911

Scaffold Ga0209990_10017911


Overview

Basic Information
Taxon OID3300027816 Open in IMG/M
Scaffold IDGa0209990_10017911 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4075
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F013279Metagenome / Metatranscriptome272Y
F017972Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0209990_100179112F003212GGAGMKDRYLVTLEIETYDGDPRAWDWSTLLGHEDQVEIIESQWKGRVLPTNEGEGNDL
Ga0209990_100179114F000821AGGAGGMNKEYLQAKADLCLNQAEIDLQQEEIARAIANLRRANSALSQLFGFEEEDSE
Ga0209990_100179115F001477AGGAGGMSNIYTIHPRKSELILFYEVVEPDGDNTWGGANAEQCIQWLSLAPSGSRVLVSAWDSDEEDAHLVGQTLDITEIVRAASL
Ga0209990_100179116F003863GGAGGMESRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGIHTRANNTPPFGDPADAGEDEGDNGGEA
Ga0209990_100179117F017972GGAGGVRTRHLQLVTHEHSATIKTRSDVLSPYGPVNPASTTWLAQETLRANQEARLLELLSSLESVVDNLNFKSFTVYDTLIIAMEGVCAALLDTPIDEVGTDETT
Ga0209990_100179119F013279AGGAMQYDYRCPDCNSVLTIERSIHEEPREPSCFDCHIPMVRKWDSPAITFKGKGFYSNGG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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