Scaffold Ga0209990_10013342

Overview

Basic Information

• Taxon OID: 3300027816
• Scaffold ID: Ga0209990_10013342
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4927
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034467	Metagenome	174	Y
F034855	Metagenome / Metatranscriptome	173	Y
F080867	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209990_100133421	F034855	GGAG	MDTRMESALALADKCWSKANRTSPEFVERYLELAEELLVSKPVVLGDEFREYCGKKLLFRPKELHPNVWVSGVRTLSTLGWIAHNGYTTPTKSHNHMPSV
Ga0209990_100133425	F034467	AGGAG	MREEIKYSSKAIPLRGCTDPKFKYYNAANTDVRKTWRKARLLIRITKGAAYESRT
Ga0209990_100133426	F080867	AGGAG	MSMNTLSLSNVVIGEDLQKSLDKEGMKMSAVYDTLDPVVSRLATLNPLWTFVVVSSGHGSGNNRIAMGFSVKLDGEELGQIGLSYMGNRGKVISISNDRIGKGRQRSDSYRTQDADKAILMAKKMFGKMNPSERIQKAKDAAERVVSRASWNKERERTQHQSLVKNEMLAWAETKGNAMFLEYLKAEAIPSLRHKVTVSMEKVELLDTEMKTIEKVQEDFSNNKTALIVKDLGKYLVKIGDKVDLYDDNTLPLDMRMKMGMLKLVEDEQYLTDVGCKVSSEIFVLLVDELTNVSEGV