Scaffold Ga0209990_10006767

Overview

Basic Information

• Taxon OID: 3300027816
• Scaffold ID: Ga0209990_10006767
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7540
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F015434	Metagenome / Metatranscriptome	254	Y
F023275	Metagenome / Metatranscriptome	210	Y
F034574	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209990_1000676720	F000808	AGGAG	MEYTYSLTTSYDGELINTLRVSDMLTAVDAWNKCVDYGFAKEYATYNLSDPTGKMYTKTFYANGEVSIK
Ga0209990_100067675	F015434	GGAGG	MESNYPEQWHRHTPKGMSIESTTTKSKKCCDTCECETTPDFNKLMETQTSFEE
Ga0209990_100067676	F023275	N/A	MAFLENLESSMADGDGMPSKKVTDAIKEMLEDPEHHKLMERLKYMEDHGI
Ga0209990_100067678	F034574	AGGAG	MKIIYSIWQGSLYKGTLTATSMKDVIATVKELNEGNTSVKFEHMVNNISQVA