Scaffold Ga0209990_10004110

Overview

Basic Information

• Taxon OID: 3300027816
• Scaffold ID: Ga0209990_10004110
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10420
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004115	Metagenome / Metatranscriptome	452	Y
F009683	Metagenome / Metatranscriptome	314	Y
F014613	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209990_1000411013	F014613	N/A	MGLMQMLPNLSDEAVVGIIIGVPFIGLYIWSLWNSSKAKAFNEGYKRGRSSVRFTEIVK
Ga0209990_1000411014	F009683	N/A	MKVIREEGQVSDSQRSLSDWLEDAGNTLLDRGIEYGDPRHNLLRIFKISKALGIQLRDPSDLALIAIATKLSRMVESPEREDSYLDLIGYAAILGRLRFSTPEDWDDIEFDSQS
Ga0209990_1000411015	F004115	GGA	LSLTRNHNTNQYCDYCKYRWGQNKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSLKEQLDDAINDFAGREKLDVELP