Scaffold Ga0209726_10008637

Overview

Basic Information

• Taxon OID: 3300027815
• Scaffold ID: Ga0209726_10008637
• Source Dataset Name: Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10882
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location

• Location Name: S. Glens Falls, New York, USA
• Coordinates
  • Lat. (^o): 43.292222
  • Long. (^o): -73.604444
  • Depth (m): 5.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000833	Metagenome / Metatranscriptome	871	Y
F104532	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209726_1000863710	F104532	N/A	MTPTLIWIDDPDNNGWACSNCPWKYPVPTFLSDPEARLAYDRLASLKFREHVCEIPVPHKDVEDTSTEPTFTKRVMKLLKVGYKPKDAVEIALNEVALEHRNDPKVMARAHAEAQDFLQRVREGKI
Ga0209726_100086375	F000833	AGGAG	MSQTALRSALSIVLAMLLPGQLLAADSASAMLYANGTAWVNGSSVPKSAAVFAGDMVQTRPDSTAHLSASGSSVMVLADSLVKFQGPAVEIEHGAVRVSTAQGLATRAGEVTVKPAGNSWTEFQVTDVDGQVQIVATKGDVTVQDQQGTTTVQEGQQTTRDDTSNPEKKKKKKRRGAGAATAAGGGILSSSVAIYTGIAIVGGITTWVLLQHDDPLSPACPNNTCP