Scaffold Ga0209742_10005142

Overview

Basic Information

• Taxon OID: 3300027814
• Scaffold ID: Ga0209742_10005142
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-8_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4712
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036487	Metagenome	170	Y
F068784	Metagenome	124	Y
F098261	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209742_100051424	F098261	GGA	MDIDQLIDMIKERSRLDIYYNPQFSFRGSAEQKKEFQTYLCDTAEVKWVDILKSIQREYSDMKVDQVIDMIEDDTFMGIKVVYKPVTTFSKWDRWEDGYIQGYLRTMTSPDYFIWTYHKMGKLKSLLSDFPDLKLLG
Ga0209742_100051425	F036487	N/A	MKEFLTKKTYTRGWGEGFKAGWKASLEEMKARLKEYKEAEQGFSEYQHAMDEAIELIDWLSGNKKDRPE
Ga0209742_100051426	F068784	N/A	MVKEYTLPLGQKLNPQRNPHTMDYQKLYRHMAIEHGLFLLDSQMQEIIDIVLEMHNEKPETCTERIKEPSNNDQMKTAMQELLDDLKQFRDEQTSPLVISTMNKVLLKASLLTTKEKDQIVNAYKEGCSDSILDESTDEERAKEYYNETYTNPDQV