Scaffold Ga0209090_10379905

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10379905
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 683
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051138	Metagenome	144	Y
F065844	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_103799051	F051138	N/A	ALSDTALAFLMNVPIGFGIIAFANWIGIITVTNEENVQLVILQNIVFTTVAIVRKTFVRIYFEKKDLERQLTSSN
Ga0209090_103799052	F065844	AGTAG	MKIQNYIEDGFSKVCDVILHPSRDDQWSYENVDKKFVGPKHTSWLYFIVNGDNIVKCGESGNPLLLLTKGNSTTSPTWKKGTFSRLGRYMNGDTTDVVIREALYDDVVAGTVSVWAKKLKVTKVKVNVMGLEKTVERCIHKDMEM