Scaffold Ga0209090_10246353

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10246353
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 905
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005832	Metagenome / Metatranscriptome	389	Y
F018813	Metagenome / Metatranscriptome	233	Y
F070548	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_102463531	F018813	AGGAG	MTMPCSIAGDMSIGHAGFSPAAITPTTTNVLVLSSPPHVVGDVIAPHVLGQAVHGGTVGKASTTVLAGNKGVARLMDKGDCQSLILGTGATVMVGG
Ga0209090_102463532	F005832	GGGGG	MSKEGIWQDSDGMKDSEMVEKWTKTLHTVEYAMEQLKHQKTALMKKREDIVNSKENKDG
Ga0209090_102463533	F070548	AGGA	MANWNSSELQTPEPIKQIGDNAQNLIDNLDILLKLVKQGADVAKLFLLLSNPVGAIIKIAANEIIKLCNDFKEIGVFYLFINPNDEGYGNQNSRVYGLAILQDANGLYQFEPSIFRIDGFNVTSVVNSAY