NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209090_10188161

Scaffold Ga0209090_10188161


Overview

Basic Information
Taxon OID3300027813 Open in IMG/M
Scaffold IDGa0209090_10188161 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1071
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010056Metagenome309Y
F049998Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0209090_101881612F049998AGGAGMIKDELTIKAFYKGKEIKIIELQHLSFFHSGLYTLGNKWKVKPFDVLMEDVSNETTLAALHIMIGLIHKDMCTKNGYEVNLKRFKNEMLLKNKNPKVFLMESDYLKIPDNHFDNGVRFLKKIGFIKTGYHNSYIQINNSIIDYCRKLGNYLFDTWYCKESFKRNTHYFGDHSSVDHYKAAQERKQINNKTLN
Ga0209090_101881613F010056N/AVWIDIMNPFLQIRLKLTAAIKRAERLYKENQIMKRRLLKYEKPGMLYYNNRRQLND

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