Scaffold Ga0209090_10169110

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10169110
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1144
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F060348	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_101691101	F001930	N/A	KSFKGYITEEVAWLQSTSKMVFDFGQISSMKIPLTSKTMTWIFNVQLPRVTVFHVTGSAGFNNLKRMQNKKKSISAFFNMNADYIESGIKTEGGLVAELDASIIMSSKSDIMSMPDKTGRRWVELHNIDPKEKMHPEFEKMLIDLAIKHDPKNKEYLKTSPEIGIGVWYKLQTDLLTKFDPAKAGKKLSLIIADYMDGVNTILKKHKKDIQGAIHGYIVRRGTVAVKHPSGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTFPHLNQFDIKKTVIPKLGKIPHKHWKTATELSTYITQVAEAEVRTFGGWARKK
Ga0209090_101691102	F060348	AGG	MKSFKQYLTERGTSLSYLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGKGVKNIAKLQ