Scaffold Ga0209090_10065052

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10065052
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2020
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004439	Metagenome	438	Y
F009367	Metagenome / Metatranscriptome	319	Y
F056076	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_100650521	F009367	N/A	SKIHSEMVDVVRLTQENGSTQLCRGGEDAVKRAWGLWPIVKAEMTGEKQLLQRMYVDEVDQPYIPSTHM
Ga0209090_100650524	F056076	N/A	LGEDFVEVDSHSLTKSGVIEEYYVEYKGESITIQAAEVSEAHGGSHSHEEKPKKKKK
Ga0209090_100650526	F004439	AGG	MKTFKSYLNEARGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDSDGVKSISKLEGKKGQISAFFSMFSRYMEVGVATSGGVHSVLEMDADVLLSASGDVMSHLDQQGRRWTSISDLKETSRWTKFAAVEKDLEKMFDPLVKKYLKKGEFQENATVWELWRMAERKVDKKTMSLIIKDYMDGMEKVIKKNIDTFSSAMLSYAKKRSTDLSWDEQIVNNIKVKTAHFFKLPIPIAQTDDQIEMSEKQQELIEFTESKGWSTKIWDAATDLE