Scaffold Ga0209090_10034175

Overview

Basic Information

• Taxon OID: 3300027813
• Scaffold ID: Ga0209090_10034175
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2913
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024225	Metagenome	207	Y
F036475	Metagenome	170	N
F071255	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209090_100341754	F071255	AGG	MEDSDFAKLSSGLKEGLSEEFSTLKGSINDLSDKMSLTEKETDGMTKVSDFVEHLNTCDNENCEIHKAQNTLNNNNYMKGFLLGAKFGKQKRN
Ga0209090_100341755	F024225	N/A	MEQDKWEINIRTLKDFKWNFYDKEIKNLSKEMPHGVTGNNIIDCYVNDENNRMYYLQNMMVICHELSHMILKIYYPKIRGKLTHDDTWGKSGDERNFFSTEIHNRVYEGKTRKFTTWHDREYYFYGVDIDDLTNKRNINNGL
Ga0209090_100341756	F036475	AGGA	MTPMQKLTLDILNDCMGIVEKRVTNPIYKQVIVKMGYPYAKKEILRTSDEELKKDMNLVYNRLKKHFSKKQLKDEIDFSNNISDIKVPKFLSEQVGEYF